Shark tooth found in Apalachicola Bay buoy marking oyster reef experiment.

Apalachicola Oyster Research: SHARK WEEK

Since they’ve deployed their experimental cages in Apalachicola Bay, David Kimbro’s crew has had some go missing, while others have been found in this condition.  Missing buoys make potentially unharmed cages nearly impossible to find.  Until just yesterday, there have been no leads as to the identities of possible culprits.

Dr. David Kimbro Northeastern University/ FSU Coastal & Marine Lab
Southern Oyster Drill

Shark week? In Apalachicola Bay, oyster drills like this one are the animals that have inflicted the most damage.

I’ll eventually get to how our research on Apalachicola Bay oysters ties into shark week. But first, let me tell you about my history with the annual Shark Week, which is put on by the Discovery Channel. Growing up as a surfer in North Carolina, the best time to surf was in the late summer and early fall. After many warm months of zero waves in the spring and summer, we lived for tropical storms that would make their way into the south east….but not get too close. I hated those suckers that got too close, because fun waves would quickly turn into pigs being on the roof and lots of misfortune for my fellow North Carolinians.

Getting to the point, every August, I was barraged by the Discovery Channel with interesting stories about sharks. Cool… but as soon as the waves start coming up, I’d have all of these thoughts about sharks circling through my head. In fact, in the line-up the next morning, it was looked down upon to talk about the previous evening’s episode of Shark Week. Now, sharks are awesome and they are critical to the health of our marine environments, but I don’t like to think about them when I’m waiting for a wave.

Okay, enter our research on Apalachicola Bay’s oyster reefs. It has been a very wet summer and the waters are very murky… you can’t see squat under water. But that doesn’t deter us, because we have been full throttle this past year and especially this summer on the monitoring and experiments.

Disclaimer: the pronoun we = Nikkie and Hanna, who have to do all the diving and data collection. To be honest, I couldn’t have asked for a better graduate student and employee to lead this research project.

Nikkie with crown conch (and egg casing), found in Apalachicola Bay.

Nikkie with crown conch (and egg casing), found in Apalachicola Bay. Surveys have found that while southern oyster drills have thrived on commercially harvested reefs on the floor of the bay, conchs have been more numerous on fringe reefs.

Now, another disclaimer is that Nikkie DISLIKES not being able to see under water. So, for all of the sites that I can’t free dive to collect the data (my scientific diver certification expired…next on the to-do list to fix), I would serve as shark/alligator bait by swimming on the surface of the water for 1/2 hour while others collected data below.

To be honest, I’ve skewered Nikkie about her fear and about needing me to serve as bait. BUT… then I got an email today from the crew, which happens to be the first mission since I departed from Florida for Massachussettes. This week, my lab is undergoing a Herculean effort to set up another experiment. In doing so today, they solved mystery of who/what has messed with all of our previous experiments and they simultaneously confirmed Nikkie’s fear. These experiments are protected by welded cages and marked with buoys, which have frequently and unfortunately gone missing. This is bad for our research funds, our time and for the data we need to understand Apalachicola and its oyster reefs.

So, in the spirit of the board game Clue...who dunna it?

Freaking sharks. Given Nikkie’s significant fear and my discounting of that fear, I sure felt bad getting this message from Hanna and Nikkie today. But hey, that’s what team Kimbro does for Apalachicola oysters!

(Edit 8/11/13.  FSU Coastal and Marine Lab’s Dr. Dean Grubbs IDs it as a bull shark.  Read more on this fact sheet from NOAA, from which we leave you with this quote: “Bull sharks are one of the three top sharks implicated in unprovoked fatal attacks throughout the world.”- Rob)

Shark tooth found in Apalachicola Bay buoy marking oyster reef experiment.

Cheers,

David

See more posts and videos on the Apalachicola oyster crisis and this research.

This material is based upon work supported by the National Science Foundation under Grant Number 1161194.  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

Dr. Randall Hughes inspects a black mangrove growing in the Saint Joseph Bay State Buffer Preserve.

Black Mangroves: Strangers in a St. Joe Bay Marsh

2-Minute Video: Mangroves don’t love the cold, but relatively mild winters have seen them multiply north of their range.  Randall takes a closer look at black mangroves in  the salt marshes of Saint Joseph Bay.

Dr. Randall Hughes FSU Coastal & Marine Lab/ Northeastern University

IGOR chip- biodiversity 150

A few years ago, I took my colleague Dr. Ed Proffitt to check out the marshes in St. Joseph Bay. He asked to see mangroves, and I thought he was crazy. Mangroves up here? No way! But we had only been in one Buffer Preserve salt marsh together for a few minutes before I realized that the small “shrubs” that I had previously ignored were actually small black mangroves! And the more we looked, the more we found. They aren’t everywhere, but they can be quite abundant in some places.

Shrubby black mangroves (Avicennia germinans) are an increasingly common site in the Saint Joseph Bay State Buffer Preserve.

Shrubby black mangroves (Avicennia germinans) appear to be an increasingly common site in the marshes of the Saint Joseph Bay State Buffer Preserve.

Mangroves typically occur below the “frost line”, or in areas that don’t experience hard freezes. Lore has it that mangroves have become more common in the northern Gulf of Mexico in recent years due to a series of mild winters. I haven’t been monitoring them long enough to say whether or not there are more now than there were, say, 10 or even 20 years ago, but it’s not hard to see that the ones that are here are successfully reproducing, with small seedlings surrounding the adult trees.

There are even red mangroves lingering around – they are less cold-tolerant than the black mangroves and a surprise to find in our marshes!

Dr. Randall Hughes inspects a black mangrove growing in the Saint Joseph Bay State Buffer Preserve.I definitely have not seen any significant dieback in the last 5 winters, even when we have had hard freezes. And I would not be surprised if they become more common and abundant as the climate continues to change.

Mangroves in the marsh raise a number of interesting questions. Will they take over? What will that mean for the services these areas provide to people? Will the fishes and crabs that we like to eat become more or less abundant if mangroves dominate over marsh grasses?

A study conducted in Texas marshes looked at conditions under which mangroves best survived in marshes.

Unfortunately, I don’t have the answer to these questions. But I can say that the mangroves that occur in St. Joseph Bay aren’t necessarily “better” at surviving in the northern Gulf than mangroves from farther down south. And why should they be?  Well, if a group of mangrove propagules arrived in St. Joe Bay, we may expect that only a subset of them would be able to survive the colder temperatures, and when these propagules grew into adult trees and produced propagules of their own, they should pass that “benefit” to their offspring (the process known as natural selection).

Black mangrove propagules.

Black mangrove propagules.

How do we we test whether St. Joe Bay mangroves are better equipped to live here than mangroves from down south? We have 2 ongoing experiments where we’ve planted “propagules” (young mangroves that look a lot like seeds) from different locations throughout FL in St. Joe Bay and followed them through time to see which ones survive and grow the best. There’s a lot of variation, but the St. Joe Bay propagules (which were largely the “runts” of the bunch to begin with) did not do as well as propagules from some of the areas down south such as Cedar Key and Cape Canaveral. These results suggest that it doesn’t take a particularly special propagule to survive in the northern Gulf; instead, there probably aren’t just many propagules that make it up here to begin with.

Of course, we’ve only been monitoring these propagules for 1-2 years; maybe the St. Joe propagules have an advantage when they get old / big enough to reproduce. We don’t want to speed up the mangrove take-over, so we’ll remove the seedlings in our experiment before that happens. But we’ll definitely continue to monitor the ones that already made it here on their own accord to see what they do next!

The Guana Tolomato Matanzas National Estuarine Research Reserve (NERR) south of Saint Augustine is where Randall and David have done a lot of their oyster research. There, mangroves mingle with marsh cordgrass. Could salt marshes in St. Joseph Bay (or north Florida in general) one day look like something approximating this?

Music in the video by pitx.

This material is based upon work supported by the National Science Foundation under Grant Number 1161194.  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

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Diversity- Getting by With a Little Help From (Salt) Marsh Friends

2-Minute Video: Marsh cordgrass, needlerush, sea lavender, mussels, periwinkle snails, and fiddler crabs: diversity in the salt marsh.

In Randall’s last post, she looked at whether genetic diversity within the salt marsh foundation species- smooth cordgrass- made for a stronger marsh (and by stronger, of course, we mean better able to shelter yummy blue crabs for people and sea turtles). In today’s post and video, Randall examines how the combination of plants and animals around cordgrass- the species diversity of a marsh- might play a role as well.
Dr. Randall Hughes FSU Coastal & Marine Lab/ Northeastern University

IGOR chip- biodiversity 150Even though salt marshes often look like one big sea of green in the intertidal, there are plants and animals other than marsh cordgrass around. And even though I devote a lot of effort to understanding the effects of diversity just within cordgrass, these other species are also important – no marsh is an island. (Well, actually they are, but you get the analogy.)

Fiddler crab found in a St. Joseph Bay salt marsh.So who is important, and why? There are at least two animals that can be classified as “friends” of cordgrass – fiddler crabs and mussels. Fiddler crabs create burrows that allow oxygen to get down in the sediment, and cordgrass roots appreciate that oxygen. The fiddler crabs also aerate the sediment during their feeding, and they can excrete nutrients that the plants use to grow.

As an aside, fiddler crabs are also irresistible for kids (and maybe adults too!).

Mussels aren’t quite as charismatic as fiddler crabs, but they like to nestle around stems of cordgrass, and the byssal threads that they use to attach to one another and to the sediment can help prevent erosion. In addition, they excrete nutrients and other organic material as a byproduct of their filter-feeding, and the plants take advantage of these nutrients.

While investigating the relationship between mussels and marsh cordgrass, Randall’s graduate student, Althea Moore, noticed that mussels also seemed to often accompany sea lavender in the marsh. This led to a separate study for Althea.

So who is MORE important, mussels or fiddler crabs? We did an experiment to test that question, or really, to test whether having mussels and fiddler crabs together is better than having just one or another. The answer? As with much in ecology – it depends. For one, it depends on what you measure. If you look at the number of cordgrass stems, then fiddler crabs are the better friend – cordgrass with fiddler crabs does better than cordgrass without fiddler crabs, regardless of whether you have mussels or not. But if you look at how tall the plants are (another important characteristic in the marsh), then mussels are the better friend, but only when fiddlers aren’t around. And if you look at the amount of organic content, mussels increase organic content at the sediment surface, whereas fiddlers increase it belowground. In the end, the take-home message is that the more things you measure about the marsh, the more important it becomes that you have both mussels and fiddler crabs in order to be the “best”.

In the process of doing the experiment I described above, Althea (my graduate student) noticed that when she was out in the marsh, she often found mussels in and around sea lavender (Limonium) plants more often than she found them around cordgrass. She became interested in finding out whether the mussels benefit the sea lavender, the sea lavender benefits the mussels, or a little bit of both. She’s still working on the answer, but it just goes to show that although we often tend to focus on who eats who (think Shark Week) or who can beat who (Octopus vs. Shark, anyone? Or, for kids, there’s always Shark vs. Train – a favorite at my house!), there are just as many instances of species helping one another (not that they always intend to).

Of course, it’s not just animals helping (aka, facilitating) plants – plants can help other plant species to. We’ve shown through a series of experiments that cordgrass benefits from having its tall neighbor needlerush (Juncus roemarianus) around, but only if the snails that like to graze on cordgrass are also present. Nothing is ever as simple as it looks in the marsh…

Music in the piece by Revolution Void.

This material is based upon work supported by the National Science Foundation under Grant Number 1161194.  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

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The Many Personalities of Salt Marsh Cordgrass

2-Minute Video: Do sea turtles and fishermen benefit from a genetic diversity in marsh cordgrass?

As Randall mentioned in her last post, biodiversity can mean many things. In this video, she examines diversity within a species, in particular marsh cordgrass (Spartina alterniflora). Each Spartina plant has its own personality. What Randall wants to know is: are more personalities better for a salt marsh (and the sea turtles and blue crabs that use it)?
Dr. Randall Hughes FSU Coastal & Marine Lab / Northeastern University

Its difficult to see the diversity of the cordgrass in this vast sea of green.IGOR chip- biodiversity 150One of the more striking things about a salt marsh at first glance is how uniform it is. A sea of green. Or maybe a sea of green (cordgrass) in the intertidal and brown (needlerush) further back. But definitely not something that screams “diversity”.  And yet, wondering about the importance of diversity in the salt marsh is what I spend a lot of my time doing.

Often, when scientists talk about diversity, they are referring to different species of plants and animals (= species diversity). But there are actually lots of different kinds of diversity – functional diversity, phylogenetic diversity, genetic diversity. To illustrate what these terms mean, let’s shift to the topic I most like to think about when I’m not thinking about science – FOOD. Functional diversity is one of the broader categories, where different species are grouped by how they look or behave. So, think vegetables vs. fruits. Or, even green leafy veggies vs. root vegetables vs. berries vs. melons. Phylogenetic diversity refers to how related the species are – broccoli and cauliflower are more closely related (and thus have less phylogenetic diversity) than broccoli and zucchini – whereas species diversity refers to how many different species there are. Finally, even a single species can have a lot of diversity within it – apples are a perfect example of a fruit with large numbers of varieties to choose from. It’s this last level of diversity, genetic diversity, that I’m really interested in.

Some of a Spartina plant's below ground root structure.  Many of the plants used in Randall's experiment have sent out rhizomes under the sediment which have sprouted new shoots.  If you're at the edge of a salt marsh and see a line of marsh cordgrass plants sticking out into the water, they're likely connected by such a rhizome.

Some of a Spartina plant's below ground root structure. Many of the plants used in Randall's experiment have sent out rhizomes under the sediment which have sprouted new shoots. If you're at the edge of a salt marsh and see a line of marsh cordgrass plants sticking out into the water, they're likely connected by such a rhizome.

Unfortunately, it’s not as easy to tell different ‘varieties’ (aka, genotypes) of cordgrass apart as it is to tell a Granny Smith from a Red Delicious. Most of the plants look really similar, and it’s impossible to tell by looking from above the ground which ones are connected by roots and rhizomes below the ground. I have 2 solutions to this problem:

1. Take small pieces of cordgrass into the lab and use even smaller snippets of DNA to tell who is who. (As my dad says, think CSI with grass.)

2. Take a single cordgrass stem and grow it in a flowerpot in the greenhouse until it starts to produce lots of other stems. By splitting these up and allowing them to continue to grow (and keeping careful track of which pot is which), I can produce a supply of known cordgrass genotypes to do experiments with.

Neither of these techniques happens overnight. In fact, it took us nearly 2 full years to get enough genotypes in the greenhouse to start doing experiments with! (Proof that even someone without a green thumb – like me – can work with plants, but it takes longer than it should.)

Each bar in these graphs represents a different marsh cordgrass genotype. You can see how each plant differs in "personality" from its number of stems and flexibility.

Each bar in these graphs represents a different marsh cordgrass genotype. You can see how each plant differs in "personality" from its number of stems and flexibility.

The cool thing about spending that much time with these plants is that you start to recognize that they have their own flavors or personalities. Some grow a few really tall stems vs. others with lots of average size stems; some flower in July vs. others that flower in October; some have really flexible stems vs. others that are more rigid (which probably matters if you’re a snail climbing up the stem).

It’s these different personalities that may allow a mixture of multiple genotypes to do better over time than a genotype growing by itself. For one, if some genotypes are better at surviving some sort of disturbance, then having a mixture of genotypes increases the chances that one of those “good” genotypes is included in the mix. Or, if genotypes are all a little bit different, they may be complementary to one another, allowing the mixture to do better than any one of them growing alone. (This “complementarity” can also be referred to as facilitation, and it’s an idea we’ll return to in coming weeks.)

We have several experiments that are wrapping up now that test this very idea – do diverse marsh patches perform better than less diverse patches? If so, why does that happen? Early indications are that the answer is like a lot of things in nature – it depends. Sometimes the diverse patches do better, and sometimes they don’t. So now the trick is to figure out how to predict when diversity will matter, and use that information to help conserve existing salt marshes and restore marshes that have been damaged in the past (which can help provide a steady supply of blue crabs for both sea turtles and us!).

Music in the piece by airtone.  Thanks to Mineral Springs Seafood for letting us tag along as they emptied their crab traps.  And thanks to Gulf Specimen Marine Lab for the underwater footage of Allie the sea turtle (good luck out there, Allie!).

This material is based upon work supported by the National Science Foundation under Grant Number 1161194.  Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.

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Grasses in Classes: Kids Learn to Build a Salt Marsh

Rob Diaz de Villegas WFSU-TV

Last week, we took a good look at the coastal salt marsh- an ecosystem with a lot to offer but that is seeing die-off across the world. Around Choctawhatchee Bay, schoolchildren are doing something about this.

Two “spoonbills” fight for lima bean. Students at the Laurel Hill School did more than plant marsh cordgrass on the coast. At this station, they were given three types of tools to use as beaks: clothespins, spoons, and chopsticks. With those beaks, the “birds” had to forage for food. The exercise taught them about the adaptations that give animals different advantages. The best adapted beaks got the most food.

IGOR chip- sedimentation 150

Finding out about Grasses in Classes was one of the pleasant surprises of the year so far.  The Choctawhatchee Basin Alliance and AmeriCorps start with a similar premise to the In the Grass, On the Reef project: to foster appreciation for coastal ecosystems like oyster reefs, seagrass beds, and salt marshes.  We write and make videos for a general audience; Grasses in Classes goes into schools.  What they do goes beyond lesson plans and worksheets.  These kids grow smooth cordgrass (Spartina alterniflora), the foundation species of a coastal salt marsh, in their classrooms.  Then they go to Choctawhatchee Bay and plant it.  How awesome is that!  You can see in the video how much the cordgrass spreads out over the course of the year, a powerful visual affirmation to the Laurel Hill School students that what they’re doing is having an impact and will benefit that coastline for years to come.

A few yards from their marshes are restored oyster reefs like the ones CBA builds in the bay.  They’re frequent collaborators, the salt marsh and oyster reef.  Marshes, oyster reefs, and seagrass beds join to create an estuary of critical importance to Gulf fisheries, sheltering most seafood species fished there at some point in their life cycles. As was said in both this and the O.Y.S.T.E.R. Recycling video, marshes and oyster reefs fight erosion.  Marshes also filter stormwater runoff (check this list of everything that flows off of asphalt).  And yet, probably because no amount of horseradish makes Spartina grass palatable, marshes don’t always capture the popular imagination as oyster reefs do.  I hope we can change some of that in the coming weeks.

That’s where the CBA might have us beat.  Through their work, a generation of schoolchildren is getting that appreciation the wet and dirty way, by actively restoring that habitat where development had removed it.  And with the school year recently concluded, CBA and AmeriCorps are gearing up for next year by hiring 13 full time employees to continue to carry the program out.  Click here for more information.

Kayla Mitchell helps a Laurel Hill student plant a Spartina plant.  Spartina is the foundation species of a coastal salt marsh.

Kayla Mitchell helps a Laurel Hill student plant a Spartina plant.